The user guide of the latest JaxoDraw release is available in Portable Document Format (pdf).
There is also an html version available for on-line browsing.
An earlier version of the user guide (v. 1.0) is hosted at Cornell's arXiv e-print archive in the form of a preprint.
The user guide for version 1.1-0 has been published in Comput. Phys. Commun. 161, 76 (2004) .
The release notes for version 2.0 have been published in Comput. Phys. Commun. 180, 1709 (2009) .